AChroMap: accessible chromatin mapper of transcriptional regulators

This is a data integration tool for transcriptomic and epigenomic data. This tool generates a list of enriched motifs in open chromatin regions (as assayed by ATAC-seq or DNAseH) for a given set genes. The foreground list of genes are differentially expressed or highly expressed genes and the background list of genes are the rest of the genes in the transcriptomic experiment.

Enter foreground list of genes

Enter background list of genes

Learn with our example

You can select example transcriptomic data sets: either DEGs between CTR and ALS patients from neuroLINCS RNA-seq or expressed genes in JURKAT cells from CCLE as measured by microarrays.

Search results

Motifs found in query gene list

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