AChroMap: accessible chromatin mapper of transcriptional regulators
This is a data integration tool for transcriptomic and epigenomic data. This tool generates a list of enriched motifs in open chromatin regions (as assayed by ATAC-seq or DNAseH) for a given set genes. The foreground list of genes are differentially expressed or highly expressed genes and the background list of genes are the rest of the genes in the transcriptomic experiment.
Enter foreground list of genes
Enter background list of genes
Choose a data set to query
Choose an identifier format
Learn with our example
You can select example transcriptomic data sets: either DEGs between CTR and ALS patients from neuroLINCS RNA-seq or expressed genes in JURKAT cells from CCLE as measured by microarrays.
Click here to use an example
Choose an data set to query
Submit gene list
Motifs found in query gene list
TFBS per gene
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